Publications
PEER REVIEWED PUBLISHED RESEARCH
Embedded Files
Research papers
Research papers
2024
Herdean, A. |England, H. |Hoch, L. Determination of Photosynthesis-Irradiance-Temperature Relationship Using the Phenoplate Walz Technical Note 2024
Herdean, A. Advancements in biofeedback photobioreactors: using the language of light deciphered from the organisms themselves Journal & Proceedings of the Royal Society of New South Wales 2024
Tirado, J. L.| Herdean, A. |Ralph, J. P. The need for smart microalgal bioprospecting. Natural Products and Bioprospecting 2024
England, H. | Herdean, A. |Matthews, J. | Hughes, D. | Roper, C. D. |Suggett, D.J. | Voolstra, C. | Camp, E.F. A portable multi-taxa phenotyping device to retrieve physiological performance traits. Scientific Reports 2024
2023
Miller, S.M.| Herdean, A. | Gupta, V. | Signal B.| Abbriano, R.M.| Ralph, P.J.| Pernice, M. Differential gene expression in a subpopulation of Phaeodactylum tricornutum with enhanced growth and carotenoid production after FACS-mediated selection. Journal of Applied Phycology 2023
Miller, S.M.| Abbriano, R.M.| Herdean, A. | Banati R.| Ralph, P.J.| Pernice, M. Random mutagenesis of Phaeodactylum tricornutum using ultraviolet, chemical, and X-radiation demonstrates the need for temporal analysis of phenotype stability. Scientific Reports
Matthews, J.L. | Hoch, L. | Campos Diocaretz, B. | Ralph, P.J. | Raina, J.B. | Seymour, J.B. | Suggett, D.J. | Herdean, A. Coral endosymbiont photophysiology and stress resilience is enhanced by microbial associations. Scientific Reports 2023
Miller, S.M.| Herdean, A. | Abbriano, R.M.| Signal, B. | Gupta, V. | Ralph, P.J.| Pernice, M. FACS-mediated selection enhances growth and carotenoid production in subpopulations of Phaeodactylum tricornutum. Journal of Applied Phycology 2023
Hoch, L. | Herdean, A. | Argyle, P.A. | Ralph, P.J. High throughput phenomics for diatoms: Challenges and solutions. Progress in Oceanography 2023
2022
Herdean, A.| Hall, C.| Hughes, D.J.| Kuzhiumparambil, U.| Diocaretz, B.C.| Ralph P.J. The Temperature mapping of non-photochemical quenching in Chlorella vulgaris. Photosynthesis Research 2022.
Dukic, E.| Gollan, P.J.| Grebe, S.| Paakkarinen, V.| Herdean, A.| Aro, E-M.| Spetea C. The Arabidopsis Thylakoid Chloride Channel ClCe Regulates ATP Availability for Light-harvesting Complex II Protein Phosphorylation. Frontiers in Plant Science 2022
McCormick, V.H.| Commault, A.| Herdean, A.| Price, S.| Pernice, M.| Ralph P.J. The Generation of Synechocystis sp. PCC 6803 mutant with enhanced laccase-like activity. Bioresource Technology Reports 2022
Herdean, A.| Sutherland, D.L.| Ralph, P.J. Phenoplate: An innovative method for assessing interacting effects of temperature and light on non-photochemical quenching in microalgae under chemical stress. New Biotechnology 2022
Johnson, M.S.| Burns, B.P.| Herdean, A.| Angeloski, A.| Ralph, P.| Morris, T.| Kindler, G.| Wong, H.L.| Kuzhiumparambil, U.| Sedger, L.M.| Larkum, A.W.D. A Cyanobacteria Enriched Layer of Shark Bay Stromatolites Reveals a New Acaryochloris Strain Living in Near Infrared Light. Microorganisms 2022
Miller, S.M.| Abbriano, R.M.| Segecova, A.| Herdean, A.| Ralph, P.J.| Pernice, M. Comparative study highlights the potential of spectral deconvolution for fucoxanthin screening in live Phaeodactylum tricornutum cultures. Marine Drugs 2022
Price, S. | Kuzhiumparambil, U.| Pernice, M. | Herdean, A.| Ralph, P.J. Enhancement of cyanobacterial PHB production using random chemical mutagenesis with detection through FACS. Bioprocess and Biosystems Engineering 2022
2021
Herdean, A.| Hall, C.C.| Pham, L.L.| Macdonald Miller, S.| Pernice, M.| Ralph, P.J. Action Spectra and Excitation Emission Matrices reveal the broad range of usable photosynthetic active radiation for Phaeodactylum tricornutum. Biochimica et Biophysica Acta - Bioenergetics 2021
Supasri, K.M.| Kumar, M.| Segečová, A.| McCauley, J.I.| Herdean, A.| Padula, M.P.| O’meara, T.| Ralph, P.J. Characterisation and bioactivity analysis of peridinin-chlorophyll a-protein (PCP) isolated from symbiodinium tridacnidorum CS-73. Journal of Marine Science and Engineering 2021
Commault, A.S.| Kuzhiumparambil, U.| Herdean, A.| Fabris, M.| Jaramillo-Madrid, A.C.| Abbriano, R.M.| Ralph, P.J.| Pernice, M. Methyl jasmonate and methyl-β-cyclodextrin individually boost triterpenoid biosynthesis in chlamydomonas reinhardtii uvm4. Pharmaceuticals 2021
2020
Babayan, A.| Neumann, M.H.D.| Herdean, A.| Shaffer, J.M.| Janning, M.| Kobus, F.| Loges, S.| Di Pasquale, F.| Kubista, M.| Schlumpberger, M.| Lampignano, R.| Krahn, T.| Schlange, T.| Sprenger-Haussels, M.| Pantel, K.| Kloten, V. Multicenter evaluation of independent high-throughput and RT-qPCR technologies for the development of analytical workflows for circulating miRNA analysis. Cancers 2020
2019
Lampignano, R.| Neumann, M.H.D.| Weber, S.| Kloten, V.| Herdean, A.| Voss, T.| Groelz, D.| Babayan, A.| Tibbesma, M.| Schlumpberger, M.| Chemi, F.| Rothwell, D.G.| Wikman, H.| Galizzi, J.-P.| Bergheim, I.R.| Russnes, H.| Mussolin, B.| Bonin, S.| Voigt, C.| Multicenter evaluation of circulating cell-free DNA extraction and downstream analyses for the development of standardized (Pre)analytical work flows. Clinical Chemistry 2019
Kloten, V.| Neumann, M.H.D.| Pasquale, F.D.| Sprenger-Haussels, M.| Shaffer, J.M.| Schlumpberger, M.| Herdean, A.| Betsou, F.| Ammerlaan, W.| af Hällström, T.| Serkkola, E.| Forsman, T.| Lianidou, E.| Sjöback, R.| Kubista, M.| Bender, S.| Lampignano, R.| Krahn. Multicenter evaluation of circulating plasma microRNA extraction technologies for the development of clinically feasible reverse transcription quantitative PCR and next-generation sequencing analytical work flows. Clinical Chemistry 2019
Zizka, A.| Silvestro, D.| Andermann, T.| Azevedo, J.| Duarte Ritter, C.| Edler, D.| Farooq, H.| Herdean, A.| Ariza, M.| Scharn, R.| Svantesson, S.| Wengström, N.| Zizka, V.| Antonelli, A. CoordinateCleaner: Standardized cleaning of occurrence records from biological collection databases. Methods in Ecology and Evolution 2019
Herdean, A.| Dukic, E.| Cheregi, O.| Sharma, A.| Nziengui, H.| Dmitruk, D.| Solymosi, K.| Pribil, M.| Spetea, C. K+ and Cl− channels/transporters independently fine-tune photosynthesis in plants. Scientific Reports 2019
2018
Carstensen, A.| Herdean, A.| Schmidt, S.B.| Sharma, A.| Spetea, C.| Pribil, M.| Husted, S. The impacts of phosphorus deficiency on the photosynthetic electron transport chain. Plant Physiology 2018
2017
Spetea, C.| Herdean, A.| Allorent, G.| Carraretto, L.| Finazzi, G.| Szabo, I. An update on the regulation of photosynthesis by thylakoid ion channels and transporters in Arabidopsis. Physiologia Plantarum 2017
Adolfsson, L.| Nziengui, H.| Abreu, I.N.| Šimura, J.| Beebo, A.| Herdean, A.| Aboalizadeh, J.| Široká, J.| Moritz, T.| Novák, O.| Ljung, K.| Schoefs, B.| Spetea, C. Enhanced secondary- and hormone metabolism in leaves of arbuscular mycorrhizal medicago truncatula. Plant Physiology 2017
2016
Herdean, A.| Nziengui, H.| Zsiros, O.| Solymosi, K.| Garab, G.| Lundin, B.| Spetea, C. The Arabidopsis thylakoid chloride channel AtCLCe functions in chloride homeostasis and regulation of photosynthetic electron transport. Frontiers in Plant Science 2016
Schneider, A.| Steinberger, I.| Herdean, A.| Gandini, C.| Eisenhut, M.| Kurz, S.| Morper, A.| Hoecker, N.| Rühle, T.| Labs, M.| Flügge, U.-I.| Geimer, S.| Schmidt, S.B.| Husted, S.| Weber, A.P.M.| Spetea, C.| Leister, D. The evolutionarily conserved protein PHOTOSYNTHESIS AFFECTED MUTANT71 is required for efficient manganese uptake at the thylakoid membrane in Arabidopsis. Plant Cell 2016
Herdean, A.| Teardo, E.| Nilsson, A.K.| Pfeil, B.E.| Johansson, O.N.| Ünnep, R.| Nagy, G.| Zsiros, O.| Dana, S.| Solymosi, K.| Garab, G.| Szabó, I.| Spetea, C.| Lundin, B. A voltage-dependent chloride channel fine-tunes photosynthesis in plants. Nature Communications 2016
2015
Karlsson, P.M.| Herdean, A.| Adolfsson, L.| Beebo, A.| Nziengui, H.| Irigoyen, S.| Ünnep, R.| Zsiros, O.| Nagy, G.| Garab, G.| Aronsson, H.| Versaw, W.K.| Spetea, C. The Arabidopsis thylakoid transporter PHT4;1 influences phosphate availability for ATP synthesis and plant growth. Plant Journal 2015
Fristedt, R.| Herdean, A.| Blaby-Haas, E.| Mamedov, F.| Merchant, S.S.| Last, R.L.| Lundin, B. PHOTOSYSTEM II PROTEIN33, a protein conserved in the plastid lineage, is associated with the chloroplast thylakoid membrane and provides stability to photosystem II supercomplexes in Arabidopsis. Plant Physiology 2015
Herdean, A. Ion transport in chloroplasts with role in regulation of photosynthesis. Gothenburg University 2015
2014
Flood, P.J.| Yin, L.| Herdean, A.| Harbinson, J.| Aarts, M.G.M.| Spetea, C. Natural variation in phosphorylation of photosystem II proteins in Arabidopsis thaliana: Is it caused by genetic variation in the STN kinases? Philosophical Transactions of the Royal Society B: Biological Sciences 2014
Kunz, H.-H.| Gierth, M.| Herdean, A.| Satoh-Cruz, M.| Kramer, D.M.| Spetea, C.| Schroeder, J.I. Plastidial transporters KEA1, -2, and -3 are essential for chloroplast osmoregulation, integrity, and pH regulation in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 2014
2012
Yin, L.| Fristedt, R.| Herdean, A.| Solymosi, K.| Bertrand, M.| Andersson, M.X.| Mamedov, F.| Vener, A.V.| Schoefs, B.| Spetea, C. Photosystem II Function and Dynamics in Three Widely Used Arabidopsis thaliana Accessions. PLoS ONE 2012
Preprint
Preprint
Beebo, A.| Zia, A. |Kinzel, C.R. | Herdean, A. | Bouhidel, K. | Kirchhoff, H. |Schoefs, B. | Spetea, C. TIP family aquaporins play role in chloroplast osmoregulation and photosynthesis. BioRxVid 2015
Protocols
Protocols
Herdean, A. PSI FluorCAM protocol for Rapid Light Curve with far red pre-illumination. https://dx.doi.org/10.17504/protocols.io.x54v9deypg3e/v1
Herdean, A. PSI Open Fluor CAM script for measuring qE component of NPQ in Chlorella vulgaris. https://dx.doi.org/10.17504/protocols.io.byn9pvh6
Herdean, A. Action Spectra protocol for Opentrons OT-1 liquid handling robot. https://dx.doi.org/10.17504/protocols.io.br6vm9e6
Patents - technology
Patents - technology
Herdean, A.| Ralph, P. | Nghiem, D. | Nguyen, L.N. | Labeeuw, L. | Campos Diocaretz, B. Modular carbon capture system; 2022 Patent number: 2022903904
Herdean, A.| Ralph, P. |Campos Diocaretz, B. Temporal variations in flux output; 2022 Patent number: 2022903903
Herdean, A.| Ralph, P. | Nghiem, D. | Nguyen, L.N. Terraced illumination apparatus and system for a photobioreactor; 2022 Patent number: 2022903901
Patents - organism
Patents - organism
Herdean, A.| Ralph, P. | Sacco, A. | Heat resistant Nannochloropsis oceanica 32C; 2022 Plant Breeders Rights application submitted 2023
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